Chapter 10 Differential abundance analysis: functional

10.1 Wilcoxon

10.1.1 Community elements differences:

   Elements     Daneborg Ittoqqortoormii                                       Function
1     B0103 6.935250e-01    0.7450205000              Nucleic acid biosynthesis_UDP/UTP
2     B0105 6.010305e-01    0.6455932000              Nucleic acid biosynthesis_ADP/ATP
3     B0106 6.083095e-01    0.6502715000              Nucleic acid biosynthesis_GDP/GTP
4     B0204 2.575210e-01    0.3192127000                 Amino acid biosynthesis_Serine
5     B0213 5.549546e-01    0.5372796000                Amino acid biosynthesis_Proline
6     B0214 1.485393e-01    0.2152364000              Amino acid biosynthesis_Glutamate
7     B0216 1.542694e-01    0.1358790000             Amino acid biosynthesis_Tryptophan
8     B0220 7.186800e-02    0.0981409800           Amino acid biosynthesis_Beta-alanine
9     B0302 3.655858e-03    0.0192885740     Amino acid derivative biosynthesis_Betaine
10    B0307 2.506668e-01    0.2872319000  Amino acid derivative biosynthesis_Spermidine
11    B0309 1.399644e-02    0.0178045000  Amino acid derivative biosynthesis_Putrescine
12    B0310 2.960911e-02    0.0550818600  Amino acid derivative biosynthesis_Tryptamine
13    B0401 6.092043e-01    0.6403524000                      SCFA biosynthesis_Acetate
14    B0402 4.026827e-01    0.4602343000                     SCFA biosynthesis_Butyrate
15    B0604 5.237257e-01    0.5833668000           Organic anion biosynthesis_L-lactate
16    B0605 2.158774e-01    0.2709147000           Organic anion biosynthesis_D-lactate
17    B0705 3.186111e-01    0.3803295000          Vitamin biosynthesis_Pyridoxal-P (B6)
18    B0708 3.923998e-01    0.4292006000           Vitamin biosynthesis_Cobalamin (B12)
19    B0801 3.233331e-03    0.0124181840      Aromatic compound biosynthesis_Salicylate
20    B0901 3.269081e-04    0.0016810465       Metallophore biosynthesis_Staphyloferrin
21    B0903 3.377793e-03    0.0072562480         Metallophore biosynthesis_Staphylopine
22    D0101 3.734807e-03    0.0109592950                 Lipid degradation_Triglyceride
23    D0104 8.426159e-02    0.1053807400           Lipid degradation_Dicarboxylic acids
24    D0203 3.903973e-01    0.3664078000              Polysaccharide degradation_Starch
25    D0205 1.210154e-01    0.1088110000              Polysaccharide degradation_Pectin
26    D0206 4.609870e-01    0.4053977000      Polysaccharide degradation_Alpha galactan
27    D0209 2.683666e-01    0.2355968000              Polysaccharide degradation_Xylans
28    D0212 2.671519e-01    0.2165644000            Polysaccharide degradation_Arabinan
29    D0213 2.721745e-01    0.2462994000               Polysaccharide degradation_Mucin
30    D0302 7.862159e-02    0.1040188800                      Sugar degradation_Sucrose
31    D0305 2.244434e-01    0.3042908000                    Sugar degradation_D-Mannose
32    D0501 8.475998e-01    0.8179996000                  Amino acid degradation_Serine
33    D0502 3.357800e-01    0.4092489000               Amino acid degradation_Threonine
34    D0503 4.495644e-03    0.0268560960                Amino acid degradation_Cysteine
35    D0505 1.837343e-01    0.2251391000                  Amino acid degradation_Valine
36    D0507 1.266100e-01    0.1371543000                 Amino acid degradation_Leucine
37    D0508 1.634020e-02    0.0375188000                  Amino acid degradation_Lysine
38    D0510 1.354174e-02    0.0326313300                 Amino acid degradation_Proline
39    D0511 5.066940e-01    0.5637296000               Amino acid degradation_Glutamate
40    D0512 1.451555e-01    0.1974073000               Amino acid degradation_Histidine
41    D0513 2.229188e-02    0.0519274300              Amino acid degradation_Tryptophan
42    D0518 3.597828e-02    0.0659609400                    Amino acid degradation_GABA
43    D0601 2.031479e-02    0.0446095400          Nitrogen compound degradation_Nitrate
44    D0603 7.236175e-03    0.0038777150            Nitrogen compound degradation_Urate
45    D0604 5.745150e-01    0.6269044000           Nitrogen compound degradation_GlcNAc
46    D0606 1.041552e-02    0.0359671200        Nitrogen compound degradation_Allantoin
47    D0607 3.607484e-02    0.0234757100       Nitrogen compound degradation_Creatinine
48    D0609 7.629635e-02    0.1004255200      Nitrogen compound degradation_L-carnitine
49    D0611 3.730326e-04    0.0122557564 Nitrogen compound degradation_Phenylethylamine
50    D0613 6.266472e-01    0.5637782000          Nitrogen compound degradation_Taurine
51    D0701 5.990063e-04    0.0060930010             Alcohol degradation_2,3-Butanediol
52    D0702 1.202748e-01    0.1866073000                    Alcohol degradation_Ethanol
53    D0704 4.635705e-01    0.5041549000                   Alcohol degradation_Glycerol
54    D0705 2.130459e-01    0.2356567000           Alcohol degradation_Propylene glycol
55    D0706 2.361974e-01    0.1972844000            Alcohol degradation_Ethylene glycol
56    D0801 7.057422e-06    0.0001986727                 Xenobiotic degradation_Toluene
57    D0802 7.057422e-06    0.0001986727                  Xenobiotic degradation_Xylene
58    D0805 2.138613e-05    0.0006020386                Xenobiotic degradation_Benzoate
59    D0807 4.153396e-03    0.0173142390                Xenobiotic degradation_Catechol
60    D0816 5.706260e-02    0.0708180800           Xenobiotic degradation_Phenylacetate
61    D0817 4.415804e-03    0.0188852290         Xenobiotic degradation_Trans-cinnamate
62    D0901 1.818927e-01    0.2930419000              Antibiotic degradation_Penicillin
63    D0903 3.796678e-03    0.0224922690           Antibiotic degradation_Cephalosporin
64    D0905 3.189864e-02    0.0547540400           Antibiotic degradation_Streptogramin
65    D0908 1.476216e-01    0.1908741000               Antibiotic degradation_Macrolide
66    D0910 2.053150e-01    0.1708522000         Antibiotic degradation_Chloramphenicol
67    D0911 1.789748e-01    0.2209285000             Antibiotic degradation_Lincosamide
68    S0101 7.258800e-01    0.7607687000               Cellular structure_Peptidoglycan
69    S0103 2.053722e-01    0.2399655000               Cellular structure_Teichoic acid
70    S0104 1.410837e-01    0.1903607000           Cellular structure_Lipoteichoic acid
71    S0105 5.839626e-01    0.5213209000          Cellular structure_Lipopolysaccharide
72    S0202 7.354700e-03    0.0284999100                               Appendages_Pilus
73    S0301 8.562811e-02    0.1276829300                                    Spore_Spore

10.1.2 Community functions differences

  Code_function    Daneborg Ittoqqortoormii                           Function
1           B03 0.077318700      0.09438063 Amino acid derivative biosynthesis
2           B04 0.477740800      0.51287920                  SCFA biosynthesis
3           B09 0.001518232      0.00353423          Metallophore biosynthesis
4           D01 0.044853630      0.05533753                  Lipid degradation
5           D05 0.219459100      0.24800010             Amino acid degradation
6           D07 0.260310300      0.28976050                Alcohol degradation
7           D08 0.007761016      0.01401465             Xenobiotic degradation
8           D09 0.127794600      0.15672580             Antibiotic degradation
9           S03 0.085628110      0.12768293                              Spore

10.1.3 Community domains differences

No differences

10.2 ANCOM-BC2

10.2.1 Element level

10.2.2 Functional level