Chapter 10 Differential abundance analysis: functional
10.1 Wilcoxon
10.1.1 Community elements differences:
Elements Daneborg Ittoqqortoormii Function
1 B0103 6.935250e-01 0.7450205000 Nucleic acid biosynthesis_UDP/UTP
2 B0105 6.010305e-01 0.6455932000 Nucleic acid biosynthesis_ADP/ATP
3 B0106 6.083095e-01 0.6502715000 Nucleic acid biosynthesis_GDP/GTP
4 B0204 2.575210e-01 0.3192127000 Amino acid biosynthesis_Serine
5 B0213 5.549546e-01 0.5372796000 Amino acid biosynthesis_Proline
6 B0214 1.485393e-01 0.2152364000 Amino acid biosynthesis_Glutamate
7 B0216 1.542694e-01 0.1358790000 Amino acid biosynthesis_Tryptophan
8 B0220 7.186800e-02 0.0981409800 Amino acid biosynthesis_Beta-alanine
9 B0302 3.655858e-03 0.0192885740 Amino acid derivative biosynthesis_Betaine
10 B0307 2.506668e-01 0.2872319000 Amino acid derivative biosynthesis_Spermidine
11 B0309 1.399644e-02 0.0178045000 Amino acid derivative biosynthesis_Putrescine
12 B0310 2.960911e-02 0.0550818600 Amino acid derivative biosynthesis_Tryptamine
13 B0401 6.092043e-01 0.6403524000 SCFA biosynthesis_Acetate
14 B0402 4.026827e-01 0.4602343000 SCFA biosynthesis_Butyrate
15 B0604 5.237257e-01 0.5833668000 Organic anion biosynthesis_L-lactate
16 B0605 2.158774e-01 0.2709147000 Organic anion biosynthesis_D-lactate
17 B0705 3.186111e-01 0.3803295000 Vitamin biosynthesis_Pyridoxal-P (B6)
18 B0708 3.923998e-01 0.4292006000 Vitamin biosynthesis_Cobalamin (B12)
19 B0801 3.233331e-03 0.0124181840 Aromatic compound biosynthesis_Salicylate
20 B0901 3.269081e-04 0.0016810465 Metallophore biosynthesis_Staphyloferrin
21 B0903 3.377793e-03 0.0072562480 Metallophore biosynthesis_Staphylopine
22 D0101 3.734807e-03 0.0109592950 Lipid degradation_Triglyceride
23 D0104 8.426159e-02 0.1053807400 Lipid degradation_Dicarboxylic acids
24 D0203 3.903973e-01 0.3664078000 Polysaccharide degradation_Starch
25 D0205 1.210154e-01 0.1088110000 Polysaccharide degradation_Pectin
26 D0206 4.609870e-01 0.4053977000 Polysaccharide degradation_Alpha galactan
27 D0209 2.683666e-01 0.2355968000 Polysaccharide degradation_Xylans
28 D0212 2.671519e-01 0.2165644000 Polysaccharide degradation_Arabinan
29 D0213 2.721745e-01 0.2462994000 Polysaccharide degradation_Mucin
30 D0302 7.862159e-02 0.1040188800 Sugar degradation_Sucrose
31 D0305 2.244434e-01 0.3042908000 Sugar degradation_D-Mannose
32 D0501 8.475998e-01 0.8179996000 Amino acid degradation_Serine
33 D0502 3.357800e-01 0.4092489000 Amino acid degradation_Threonine
34 D0503 4.495644e-03 0.0268560960 Amino acid degradation_Cysteine
35 D0505 1.837343e-01 0.2251391000 Amino acid degradation_Valine
36 D0507 1.266100e-01 0.1371543000 Amino acid degradation_Leucine
37 D0508 1.634020e-02 0.0375188000 Amino acid degradation_Lysine
38 D0510 1.354174e-02 0.0326313300 Amino acid degradation_Proline
39 D0511 5.066940e-01 0.5637296000 Amino acid degradation_Glutamate
40 D0512 1.451555e-01 0.1974073000 Amino acid degradation_Histidine
41 D0513 2.229188e-02 0.0519274300 Amino acid degradation_Tryptophan
42 D0518 3.597828e-02 0.0659609400 Amino acid degradation_GABA
43 D0601 2.031479e-02 0.0446095400 Nitrogen compound degradation_Nitrate
44 D0603 7.236175e-03 0.0038777150 Nitrogen compound degradation_Urate
45 D0604 5.745150e-01 0.6269044000 Nitrogen compound degradation_GlcNAc
46 D0606 1.041552e-02 0.0359671200 Nitrogen compound degradation_Allantoin
47 D0607 3.607484e-02 0.0234757100 Nitrogen compound degradation_Creatinine
48 D0609 7.629635e-02 0.1004255200 Nitrogen compound degradation_L-carnitine
49 D0611 3.730326e-04 0.0122557564 Nitrogen compound degradation_Phenylethylamine
50 D0613 6.266472e-01 0.5637782000 Nitrogen compound degradation_Taurine
51 D0701 5.990063e-04 0.0060930010 Alcohol degradation_2,3-Butanediol
52 D0702 1.202748e-01 0.1866073000 Alcohol degradation_Ethanol
53 D0704 4.635705e-01 0.5041549000 Alcohol degradation_Glycerol
54 D0705 2.130459e-01 0.2356567000 Alcohol degradation_Propylene glycol
55 D0706 2.361974e-01 0.1972844000 Alcohol degradation_Ethylene glycol
56 D0801 7.057422e-06 0.0001986727 Xenobiotic degradation_Toluene
57 D0802 7.057422e-06 0.0001986727 Xenobiotic degradation_Xylene
58 D0805 2.138613e-05 0.0006020386 Xenobiotic degradation_Benzoate
59 D0807 4.153396e-03 0.0173142390 Xenobiotic degradation_Catechol
60 D0816 5.706260e-02 0.0708180800 Xenobiotic degradation_Phenylacetate
61 D0817 4.415804e-03 0.0188852290 Xenobiotic degradation_Trans-cinnamate
62 D0901 1.818927e-01 0.2930419000 Antibiotic degradation_Penicillin
63 D0903 3.796678e-03 0.0224922690 Antibiotic degradation_Cephalosporin
64 D0905 3.189864e-02 0.0547540400 Antibiotic degradation_Streptogramin
65 D0908 1.476216e-01 0.1908741000 Antibiotic degradation_Macrolide
66 D0910 2.053150e-01 0.1708522000 Antibiotic degradation_Chloramphenicol
67 D0911 1.789748e-01 0.2209285000 Antibiotic degradation_Lincosamide
68 S0101 7.258800e-01 0.7607687000 Cellular structure_Peptidoglycan
69 S0103 2.053722e-01 0.2399655000 Cellular structure_Teichoic acid
70 S0104 1.410837e-01 0.1903607000 Cellular structure_Lipoteichoic acid
71 S0105 5.839626e-01 0.5213209000 Cellular structure_Lipopolysaccharide
72 S0202 7.354700e-03 0.0284999100 Appendages_Pilus
73 S0301 8.562811e-02 0.1276829300 Spore_Spore
10.1.2 Community functions differences
Code_function Daneborg Ittoqqortoormii Function
1 B03 0.077318700 0.09438063 Amino acid derivative biosynthesis
2 B04 0.477740800 0.51287920 SCFA biosynthesis
3 B09 0.001518232 0.00353423 Metallophore biosynthesis
4 D01 0.044853630 0.05533753 Lipid degradation
5 D05 0.219459100 0.24800010 Amino acid degradation
6 D07 0.260310300 0.28976050 Alcohol degradation
7 D08 0.007761016 0.01401465 Xenobiotic degradation
8 D09 0.127794600 0.15672580 Antibiotic degradation
9 S03 0.085628110 0.12768293 Spore
